c++ - Generating documentation with doxygen -

i generate documentation c++ files doxygen. when *.h , *.cpp files stored in 1 folder. type

doxygen -g doxygenfile 

and

doxygen doxygenfile 

after have latex folder , html folder. good. problem when these files *.h *.cpp stored in different locations, e.g.: *.h in h folder *.cpp in cpp folder , on. tell me how generate documentation in case?

if want gui tweak how doxygen works can use doxywizard , open generate doxyfile.

in order make doxygen subdirectories can change in doxyfile line

recursive              = 

with

recursive              = yes 

edit: bornruffians pointed out, doxygen looks source files in directories specified in input setting (always in doxyfile). can specify each directory in input tag writing like

input = "src/cpp" "src/h" 

and turn off recursive tag. can put single files values input tag.